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مقالات مرکز تحقیقات بیوانفورماتیک از سال 2016 تا 2022 (تعداد کل مقالات 64-مقالات مشترک داخلی 36 -مقالات با همکاری بین المللی 20 - نویسندگانی که هایلایت شدند آدرس سازمانی مرکز را ذکر کردند. برای مشاهده مقاله روی عنوان مقاله کلیک کنید.
ساير نويسندگان	نويسنده مسئول	نوع مقاله	پايگاه داده	IF	CiteScore	سال انتشار	نام مجله	عنوان مقاله	رديف
Nazemi H.	Mirzaei M.	Original	ESCI(ISI)	-	1.6 Q3	2022	Biointerface Research in Applied Chemistry12(3), pp. 3752-3761	In silico interactions between curcumin derivatives and monoamine oxidase-a enzyme	1
Maryam Mashkouli, Mahmoud Aghaei	Mohammad Reza Mofid	Original	ISI WOS	2.371 Q4	2.6 Q3	2020	Protein Journal	Purification of Soluble Membrane-Bound Ambystoma mexicanum Epidermal Lipoxygenase from E. coli and Its Growth Effect on Human Fetal Foreskin Fibroblast	2
Ataei, N., Aghaei, M.,	Panjehpour, M.	Original	ISI WOS	3.5 Q2	5.6 Q2	2019	Toxicology in Vitro 56, pp. 184-193	Evidences for involvement of estrogen receptor induced ERK1/2 activation in ovarian cancer cell proliferation by Cadmium Chloride	3
Mostashari-Rad, T., Saghaei, L.,	Fassihi, A.	Original	ISI WOS	2.877 Q2	3.5 Q2	2019	Computational Biology and Chemistry 79, pp. 119-126	Gp41 inhibitory activity prediction of theaflavin derivatives using ligand/structure-based virtual screening approaches	4
Ataei, N., Aghaei, M.,	Panjehpour, M.	Original	ESCI(ISI)	-	4 Q1	2018	Research in Pharmaceutical Sciences, 13(2), pp. 159-167	The protective role of melatonin in cadmium-induced proliferation of ovarian cancer cells	5
Mohamadi, A., Aghaei, M.,	Panjehpour, M.	Original	ESCI(ISI)	-	4 Q1	2018	Research in Pharmaceutical Sciences, 13(1), pp. 57-64	Estrogen stimulates adenosine receptor expression subtypes in human breast cancer MCF-7 cell line	6
Ataei, N., Aghaei, M.,	Panjehpour, M.	Original	ESCI(ISI)	-	4 Q1	2018	Research in Pharmaceutical Sciences, 13(6), pp. 500-508	Cadmium induces progesterone receptor gene expression via activation of estrogen receptor in human ovarian cancer cells	7
Ansari, A., Gheysarzadeh, A.,	Mofid, M.R.	Original	Scopus	-	0.3 Q4	2017	Journal of Isfahan Medical School,35(451), pp. 1452-1461.	The interaction of insulin-like growth factor binding protein 3 (IGFBP-3) in insulin-like growth factor (IGF)-independent system	8
3-ارتباطات بین بخشی داخل کشور
Mohammad Reza Mofid, Jafari S.,Haddad L., Moghim S.,Ghanavi J.	Babaeipour V.	Original	ISI	2.431 Q3	3.6 Q2	2021	Biotechnology and Applied Biochemistry, 68(4), pp. 776-788	Efficient process development for high-level production, purification, formulation, and characterization of recombinant mecasermin in Escherichia coli	9
Azimi F., Azizian H., Najafi M., Khodarahmi G., Saghaei L., Hassanzadeh M., Ghasemi J.B., Faramarzi M.A., Larijani B.,	Hassanzadeh F., Mahdavi M.	Original	ISI	4.379 Q1	7.1 Q1	2021	Scientific Reports, 11(1),20776	Design, synthesis, biological evaluation, and molecular modeling studies of pyrazole-benzofuran hybrids as new alpha-glucosidase inhibitor	10
Hosseini-Sharifabad, A., Mofid, M.R., Moradmand, M.,	Keimasi, M.	Original	Scopus	-	0.6 Q4	2021	Iranian Journal of Toxicology, 15(1), pp. 49-56	The effect of omega-lycotoxin on the cognitive impairment induced by kainic acid in rats	11
Farnoush Oveissi , Naser Tavakoli , Mohsen Minaiyan, Mohammad Reza Mofid, Azade Taheri	Azade Taheri	Original	ISI WOS	2.646 Q3	4.1 Q2	2020	Journal of Biomaterials Applications	Alginate hydrogel enriched with Ambystoma mexicanum epidermal lipoxygenase-loaded pectin nanoparticles for enhanced wound healing	12
Farshid Hasanzadeh, Ahmad Movahedian Attar, Lotfalah Saghaie, Mehrdad Mohammadpour	Afshin Fassihi	Original	ISI (ESCI) WOS	-	4 Q1	2020	Research in Pharmaceutical Sciences	Synthesis and evaluation of antioxidant activity of some novel hydroxypyridinone derivatives: A DFT approach for explanation of their radical scavenging activity	13
Elnaz Khalili Samani,Mohammad Reza Mofid,	Morteza Malakoutikhah	Original	ISI WOS	1.905 Q4	3.7 Q2	2020	Journal of Peptide Science	The effect of terminal groups and halogenation of KLVFF peptide on its activity as an inhibitor of beta-amyloid aggregation	14
Zahra Bidram, Hajar Sirous , Ghadam Ali Khodarahmi,Farshid Hassanzadeh,Nasim Dana,Amir Ali Hariri	Mahboubeh Rostami	Original	ISI(ESCI) WOS	-	4 Q1	2020	Research in Pharmaceutical Sciences	Monastrol derivatives: In silico and in vitro cytotoxicity assessments	15
Seyfi, R., Mofid, M.R., Kahaki, F.A.	Babaeipour V.	Original	ISI WOS	2.431 Q3	3.6 Q2	2019	Biotechnology and Applied Biochemistry 66(1), pp. 119-129	Expression and production of recombinant scorpine as a potassium channel blocker protein in Escherichia coli	16
Hasannejad, M., , Esmaili, A., Jahanian-Najafabadi, A.	Samsamshariat, S.Z.	Original	ESCI(ISI)	-	4 Q1	2019	Research in Pharmaceutical Sciences,14(4), pp. 369-377	Klotho induces insulin resistance possibly through interference with GLUT4 translocation and activation of Akt, GSK3beta, and PFKfbeta3 in 3T3-L1 adipocyte cells	17
Googheri, M.S., Mirzaei, M.	Abolhassani M.R.	Original	ISI WOS	2.518 Q2	3.9 Q2	2019	Journal of Molecular Graphics and Modelling, 87, pp. 41-47	A molecular modelling study of the effects of pivalate ligand substitutions on the magnetic properties of chromium-wheels host complexes	18
Daneshpour, S., Rostamirad, S., Kefayat, A., Safavi, A., Mofid MR.	Darani, H.	Original	ESCI(ISI)		2.8 Q2	2019	International Journal of Preventive Medicine, 10(1),143	Identifying the most effective hydatid cyst fluid fraction for anticancer vaccination of 4T1 breast tumor-bearing mice	19
Sherafati, M., , Ardjmand, M., Peyravi, M., Mirzaei, M.	Shokuhi Rad, A.	Original	ISI WOS	2.48 Q3	4.3 Q2	2018	Current Applied Physics,18(9), pp. 1059-1065.	Beryllium oxide (BeO) nanotube provides excellent surface towards adenine adsorption: A dispersion-corrected DFT study in gas and water phases	20
Ghasemi, A., Hashemy, S.I., Aghaei, M.,	Panjehpour, M.	Original	ISI WOS	4.429 Q2	6.8 Q1	2018	Journal of Cellular Biochemistry, 119(2), pp. 2333-2344	Leptin induces matrix metalloproteinase 7 expression to promote ovarian cancer cell invasion by activating ERK and JNK pathways	21
Jafari, S.M., Joshaghani, H.R., Panjehpour, M.,	Aghaei, M.	Original	ISI WOS	6.73 Q1	8.7 Q1	2018	Cellular Oncology 41(1), pp. 61-72	A2B adenosine receptor agonist induces cell cycle arrest and apoptosis in breast cancer stem cells via ERK1/2 phosphorylation	22
Naderi, S., Zare, H., Taghavinia, N., Aghaei, M.,	Panjehpour, M.	Original	ISI WOS	2.273 Q3	3.4 Q2	2018	Toxicology and Industrial Health 34(5), pp. 339-352	Cadmium telluride quantum dots induce apoptosis in human breast cancer cell lines	23
Shariat, S.Z.A.S., Borzouee, F., Mofid, M.R.,	Varshosaz, J.	Original	ISI WOS	2.461 Q3	3.8 Q2	2018	Biotechnology Letters, 40(9-10), pp. 1343-1353	Immobilization of lactoperoxidase on graphene oxide nanosheets with improved activity and stability	24
Hosseini, F., Hosseini, F., Jafari, S.M.,	Taheri, A.	Original	ISI WOS	1.478 Q3	2.4 Q3	2018	Clay Minerals 53(1), pp. 53-63	Bentonite nanoclay-based drug-delivery systems for treating melanoma	25
Jafari, E., Gheysarzadeh, A., Mahnam, K., Bakhtyari, H.,	Mofid, M.R.	Original	ESCI(ISI)		4 Q1	2018	Research in Pharmaceutical Sciences, 13(4), pp. 332-342.	In silico interaction of insulin-like growth factor binding protein 3 with insulin-like growth factor 1	26
Hassanzadeh, F.,	Jafari, E.	Original	ISI WOS	1.852 Q3	3.3 Q1	2018	Journal of Research in Medical Sciences 23(1),53.	Cyclic imide derivatives: As promising scaffold for the synthesis of antimicrobial agents	27
Sadeghian-Rizi, S., Khodarahmi, G., Sakhteman, A., Mirzaei, M.,	Hassanzadeh, F.	Original	ESCI(ISI)	-	4 Q1	2018	Research in Pharmaceutical Sciences, 13(1), pp. 82-92	Synthesis and characterization of some novel diaryl urea derivatives bearing quinoxalindione moiety	28
Rad, S.R., Daneshpour, S., Mofid, M.R., Eskandariyan, A.,	Darani, H.Y.	Original	ISI WOS	1.77 Q4	2.5 Q4	2018	Cellular and Molecular Biology 64(12), pp. 1-5	Effect of hydatid cyst antigens on inhibition of melanoma cancer growth in mouse model	29
Sadeghi Googheri, M., Mirzaei, M.	Abolhassani, M.R.,	Original	ISI WOS	1.962 Q3	3.1 Q2	2018	Molecular Physics 116(10), pp. 1306-1319	Influence of ligand-bridged substitution on the exchange coupling constant of chromium-wheels host complexes: a density functional theory study	30
Goudarzi, F., Mohammadalipour, A., Bahabadi, M., Goodarzi, M.T.,	Khodadadi, I.	Original	Scopus	-	0.4 Q3	2018	Scientific Journal of Kurdistan University of Medical Sciences, 22(6), pp. 63-73	The ability of H2O2 to induce differentiation of human mesenchymal stem cells into chondrocytes	31
Ghashghaei, S., Mofid, M.R.	Etemadifar, Z.,	Original	ISI WOS	1.194 Q3	1.8 Q2	2018	Iranian Journal of Science and Technology, Transaction A: Science,42(3), pp. 1139-1147	Studies on the Kinetics of Antibacterial Agent Production in Two Actinomycete Strains, F9 and Is5, Isolated from Soil Samples, Iran	32
Mirabi, A., Peyravi, M., Mirzaei, M.	Rad, A.S.	Original	ISI WOS	1.24 Q4	2.1 Q3	2017	Canadian Journal of Physics, 95(10), pp. 958-962.	Nickel-decorated B12P12 nanoclusters as a strong adsorbent for SO2 adsorption: Quantum chemical calculations	33
Ghasemi, A., Hashemy, S.I., Aghaei, M.,	Panjehpour, M.	Original	ISI WOS	4.315 Q3	6.5 Q2	2017	Cellular Signalling, 32, pp. 104-114	RhoA/ROCK pathway mediates leptin-induced uPA expression to promote cell invasion in ovarian cancer cells	34
Aletaha, S., Haddad, L., Roozbehkia, M., Mahmoudi, M.,	Mirshafiey, A.	Original	ISI WOS	3.487 Q3	4.7 Q3	2017	Scandinavian Journal of Immunology, 85(2), pp. 122-129	M2000 (beta-D-Mannuronic Acid) as a Novel Antagonist for Blocking the TLR2 and TLR4 Downstream Signalling Pathway	35
Zhalehjoo, N., Shakiba, Y.,	Panjehpour, M.	Original	ISI WOS	2.952 Q3	4.5 Q2	2017	Molecular Medicine Reports, 15(1), pp. 467-473	Gene expression profiles of CYP24A1 and CYP27B1 in malignant and normal breast tissues	36
Jafari, S.M., Panjehpour, M., Joshaghani, H.R., Enderami, S.E.	Aghaei, M.,	Original	ISI WOS	4.429 Q2	6.8 Q1	2017	Journal of Cellular Biochemistry, 118(9), pp. 2909-2920	A3 Adenosine Receptor Agonist Inhibited Survival of Breast Cancer Stem Cells via GLI-1 and ERK1/2 Pathway	37
Jafari, S.M., Joshaghani, H.R., Panjehpour, M., Zargar Balajam, N.	Aghaei, M.,	Original	ISI WOS	6.831 Q1	8.4 Q1	2017	Cell Proliferation,50(4),e12345	Apoptosis and cell cycle regulatory effects of adenosine by modulation of GLI-1 and ERK1/2 pathways in CD44+ and CD24− breast cancer stem cells	38
A., Taghvaei, V., Moradi Rufchahi, E., Mirzaei, M.	Ghanadzadeh Gilani,	Original	ISI WOS	4.098 Q1	5.8 Q1	2017	Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy,185, pp. 111-124	Photo-physical and structural studies of some synthesized arylazoquinoline dyes	39
Joshaghani, H., Jafari, S., Panjehpour, M., Abedi, H.	Aghaei, M.,	Original	ISI WOS	1.805 Q4	2.1 Q3	2017	Journal of Cancer Research and Therapeutics,13(1), pp. 107-112	A3 adenosine receptor agonist induce G1 cell cycle arrest via Cyclin D and cyclin-dependent kinase 4 pathways in OVCAR-3 and Caov-4 cell lines	40
Sadeghian-Rizi, S., Khodarahmi, G.A., Sakhteman, A., Mirzaei, M.,	Hassanzadeh, F.	Original	ESCI(ISI)	-	4 Q1	2017	Research in Pharmaceutical Sciences 12(6), pp. 500-509	Biological evaluation, docking and molecular dynamic simulation of some novel diaryl urea derivatives bearing quinoxalindione moiety	41
Shafiee, F., Enteshari, R., Rabbani, M.,	Jahanian-Najafabadi, A.	Original	Scopus	-	0.3 Q4	2017	Journal of Isfahan Medical School, 35(433), pp. 655-661	In-vivo evaluation of DT386-BR2, a promising anticancer fusion protein, in mice model	42
Rofouei, M.K., Aghaei, A., Mirzaei, M.	Soleymani, R.,	Original	ISI WOS	3.196 Q3	4.6 Q2	2016	Journal of Molecular Structure,1125, pp. 247-259	Synthesis, vibrational, electrostatic potential and NMR studies of (E and Z) 1-(4-chloro-3-nitrophenyl)-3-(2-methoxyphenyl)triazene: Combined experimental and DFT approaches	43
Zhalehjoo, N., Shakiba, Y.,	Panjehpour, M.	Original	ISI WOS	1.138 Q4	1.5 Q3	2016	Clinical Laboratory, 62(8), pp. 1461-1468	Alterations of Vitamin D receptor (VDR) expression profile in normal and malignant breast tissues	44
4-همکاری های بین المللی
Hadipour, N., Gülseren, O.	Mirzaei, M.	Original	Scopus	-	0.9 Q3	2021	Turkish Computational and Theoretical Chemistry, 5(1), pp. 13-19	DNA Codon Recognition by a Cubane Wire: In Silico Approach	45
Campiani, G., Calderone, V.,	Sirous, H., Brogi, S.	Original	ISI	4.589 Q1	7.3 Q1	2021	Computers in Biology and Medicine, 137,104808	Discovery of novel hit compounds as potential HDAC1 inhibitors: The case of ligand- and structure-based virtual screening	46
Pouria Shirvani,, Lotfollah Saghaie, SiskaVan Belle, Zeger Debyser, Frauke Christ	Afshin Fassihi	Original	ISI WOS	3.196 Q3	4.6 Q2	2020	Journal of Molecular Structure	Synthesis, anti-HIV-1 and antiproliferative evaluation of novel 4-nitroimidazole derivatives combined with 5-hydroxy-4-pyridinone moiety	47
Giuseppe Campiani, Simone Brogi, Vincenzo Calderone , Giulia Chemi	Hajar Sirous	Original	ISI WOS	4.411 Q2	4.7 Q2	2020	Molecules	Computer-driven development of an in silico tool for finding selective histone deacetylase 1 inhibitors	48
Hajar Sirous, Vincenzo Calderone, Giulia Chemi	Simone Brogi	Original	ISI WOS	5.396 Q1	6.4 Q1	2020	Food and Function	Amyloid ss fibril disruption by oleuropein aglycone: Long-time molecular dynamics simulation to gain insight into the mechanism of action of this polyphenol from extra virgin olive oil	49
, Chemi, G., Campiani, G., Brogi, S.	Sirous, H.	Original	ISI WOS	2.877 Q2	3.5 Q2	2019	Computational Biology and Chemistry, 83,107105	An integrated in silico screening strategy for identifying promising disruptors of p53-MDM2 interaction	50
A., Taghvaei, V., Moradi Rufchahi, E., Mirzaei, M.	Ghanadzadeh Gilani,	Original	ISI WOS	6.165 Q1	8.4 Q1	2019	Journal of Molecular Liquids, 273, pp. 392-407	Tautomerism, solvatochromism, preferential solvation, and density functional study of some heteroarylazo dyes	51
Sirous, H, Campiani G., ,Christ F.,Debyser Z.,Gemma S. ,Butini S.,Chemi G,Grillo A.,Zabihollahi R.,Aghasadeghi M.R.	Fassihi A.,Brogi S.	Original	ISI WOS	2.745 Q3	4.1 Q3	2019	Medicinal Chemistry,15(7), pp. 755-770	Synthesis, molecular modelling and biological studies of 3-hydroxy-pyrane-4-one and 3-hydroxy-pyridine-4-one derivatives as HIV-1 integrase inhibitors	52
Sirous H.,Chemi G.,Gemma S.,Butini S.,Debyser Z.,Christ F.,Saghaie L.	Brogi S.,Fassihi A.,Campiani G.	Original	ISI WOS	5.221 Q2	4.1 Q2	2019	Frontiers in Chemistry,7,574	Identification of Novel 3-Hydroxy-pyran-4-One Derivatives as Potent HIV-1 Integrase Inhibitors Using in silico Structure-Based Combinatorial Library Design Approach	53
Aghaei, S.M., Pazoki, H., Binaeian, E., Mirzaei, M.	Rad, A.S.	Original	ISI WOS	1.607 Q4	3 Q2	2018	Surface and Interface Analysis, 50(4), pp. 411-419	Surface interaction of H2O and H2S onto Ca12O12 nanocluster: Quantum-chemical analyses	54
Harismah, K., Sahebi, H., Gülseren, O., Rad, A.S.	Mirzaei, M.	Original	ISI WOS	4.094 Q2	5.6 Q1	2018	Materials Chemistry and Physics, 205, pp. 164-170	Chemically uracil-functionalized carbon and silicon carbide nanotubes: Computational studies	55
Mirzaei, M., Moradi, R.	Harismah, K.,	Original	ISI WOS	1.426 Q3	2.7 Q2	2018	Zeitschrift fur Naturforschung - Section A Journal of Physical Sciences, 73(8), pp. 685-691	DFT studies of single lithium adsorption on coronene	56
Harismah, K., Jafari, E., Gülseren, O., Rad, A.S.	Mirzaei, M.,	Original	ISI WOS	1.5 Q4	2.7 Q3	2018	European Physical Journal B 91(1),14	Functionalization of (n, 0) CNTs (n = 3-16) by uracil: DFT studies	57
Aghaei, S.M., Poralijan, V., Peyravi, M., Mirzaei, M.	Rad, A.S.	Original	ISI WOS	1.926 Q4	3.2 Q2	2017	Computational and Theoretical Chemistry,1109, pp. 1-9	Application of pristine and Ni-decorated B12P12 nano-clusters as superior media for acetylene and ethylene adsorption: DFT calculations	58
Orooji, Y., Liang, F., Razmjou, A., Liu, Z., Mofid, MR	Jin, W.	Original	ISI WOS	9.229 Q1	14 Q1	2017	ACS Applied Materials and Interfaces, 9(35), pp. 30024-30034	Excellent Biofouling Alleviation of Thermoexfoliated Vermiculite Blended Poly(ether sulfone) Ultrafiltration Membrane	59
Mirzaei, M., Ghasemi, N., Nejati, M.	Harismah, K.,	Original	ISI WOS	1.426 Q3	2.7 Q2	2017	Zeitschrift fur Naturforschung - Section A Journal of Physical Sciences,73(1), pp. 51-56	Non-Covalent Functionalisation of C30 Fullerene by Pyrrole-n-Carboxylic Acid (n=2, 3): Density Functional Theory Studies	60
Vitasari, D., Mirzaei, M., Fuadi, A.M., Aryanto, Y.H.	Harismah, K.,	Conference Abstract	Scopus	-	0.7 Q4	2017	AIP Conference Proceedings,1855,020023	Protection capacity of mosquito repellent ink from citronella (Cymbopogon nardus L.) and clove leaf oils (Syzygium aromaticum) againts Aedes aegypti	61
Harismah, K.,	Mirzaei, M., Samadizadeh, M., Rad, A.S.	Original	ISI WOS	2.658 Q3	5 Q1	2017	Superlattices and Microstructures,109, pp. 360-365	DFT studies of stabilities and properties for X3Y6Z9 borazine-like structures (X= B/Al, Y= N/P, Z= H/Me)	62
Gülseren, O., Hadipour, N.	Mirzaei, M.,	Original	ISI WOS	1.926 Q4	3.2 Q2	2016	Computational and Theoretical Chemistry,1090, pp. 67-73	DFT explorations of quadrupole coupling constants for planar 5-fluorouracil pairs	63
Kouchaki, A., Gülseren, O., Hadipour, N.,	Mirzaei, M.	Original	ISI WOS	2.654 Q2	3.9 Q2	2016	Physics Letters, Section A: General, Atomic and Solid State Physics,380(25-26), pp. 2160-2166	Relaxations of fluorouracil tautomers by decorations of fullerene-like SiCs: DFT studies	64